Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
DNA-binding protein HU, beta subunit; Identified by similarity to SP-P02346; match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family (95 aa)
Predicted Functional Partners:
DNA-binding protein HU, beta subunit, putative; Identified by similarity to SP-P08821; match to protein family HMM PF00216 (93 aa)
Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control (95 aa)
Integration host factor, beta subunit; Identified by similarity to SP-Q06607; match to protein family HMM PF00216 (91 aa)
Conserved domain protein; Identified by similarity to GP-14277814 (79 aa)
Bacteriophage DNA transposition B protein, putative; Identified by similarity to GP-974770 (245 aa)
Bacteriophage transposase A protein, putative; Identified by similarity to SP-P07636 (717 aa)
Host-nuclease inhibitor protein Gam, putative; Identified by similarity to SP-P06023 (170 aa)
Uncharacterized protein; Identified by Glimmer2; putative (210 aa)
Uncharacterized protein; Identified by Glimmer2; putative (62 aa)
Uncharacterized protein; Identified by similarity to OMNI-NMB0985 (169 aa)
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882 Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough