STRINGSTRING
DVU_1388 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1388" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1388Uncharacterized protein; Identified by similarity to OMNI-SO1143 (251 aa)    
Predicted Functional Partners:
DVU_3266
annotation not available (263 aa)
   
          0.771
DVU_2409
Bacterial extracellular solute-binding proteins, family 3; Identified by match to protein family HMM PF00497 (270 aa)
   
          0.717
DVU_3139
Bacterial extracellular solute-binding protein, family 3; Identified by match to protein family HMM PF00497 (258 aa)
   
          0.707
DVU_2662
Uncharacterized protein; Identified by similarity to SP-P54952 (254 aa)
   
          0.687
DVU_0852
annotation not available (265 aa)
   
          0.622
DVU_0089
Uncharacterized protein; Identified by similarity to OMNI-VCA0583 (267 aa)
   
          0.579
DVU_1562
HAMP domain protein; Identified by match to protein family HMM PF00672 (964 aa)
 
 
  0.505
DVU_0636
Response regulator/GGDEF domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254 (437 aa)
 
 
 
  0.492
DVU_1387
Uncharacterized protein; Identified by similarity to OMNI-NTL01CJ01237 (442 aa)
              0.488
DVU_0111
Response regulator; Identified by match to protein family HMM PF00072 (268 aa)
 
 
 
  0.408
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (24%) [HD]