STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1715Hypothetical protein; Identified by Glimmer2; putative. (195 aa)    
Predicted Functional Partners:
DVU_1714
Conserved hypothetical protein; Identified by similarity to GP:13186158.
 
    0.913
DVU_1721
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.898
DVU_2604
Conserved hypothetical protein; Identified by similarity to GP:13186164.
 
    0.819
DVU_2596
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.805
DVU_1724
Phage uncharacterized protein, putative.
 
    0.688
DVU_1717
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.680
DVU_1716
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.666
DVU_3073
Conserved domain protein; Identified by similarity to OMNI:HI1195.
  
    0.659
DVU_1728
Conserved hypothetical protein; Identified by similarity to GP:16506030.
 
    0.639
DVU_1458
Chemotaxis protein CheZ, putative; Identified by similarity to SP:P07800.
  
     0.631
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.