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DVU_1836 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1836" - tRNA nucleotidyltransferase, putative in Desulfovibrio vulgaris Hildenborough
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second shell of interactors
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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Score
DVU_1836tRNA nucleotidyltransferase, putative; Identified by match to protein family HMM PF01743 (383 aa)    
Predicted Functional Partners:
DVU_3055
Ribonuclease, Rne/Rng family; Identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 (489 aa)
     
  0.956
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (96 aa)
     
 
    0.913
polA
DNA polymerase I; Identified by similarity to SP-P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 (1015 aa)
 
   
  0.770
DVU_1835
Biotin--acetyl-CoA-carboxylase ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121 (304 aa)
         
  0.728
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (760 aa)
   
 
  0.669
DVU_3207
Identified by match to protein family HMM PF00773 (698 aa)
 
 
  0.648
rnr
Ribonuclease R; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (886 aa)
   
 
  0.602
DVU_1834
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second (1225 aa)
              0.562
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP (515 aa)
   
        0.550
hrpB
ATP-dependent helicase HrpB; Identified by similarity to SP-P37024; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM TIGR01970 (847 aa)
   
      0.524
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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