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DVU_1858 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1858" - Cold shock domain protein in Desulfovibrio vulgaris Hildenborough
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
DVU_1858Cold shock domain protein; Identified by match to protein family HMM PF00313 (178 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; Identified by similarity to SP-P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 (1015 aa)
   
   
  0.660
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (760 aa)
     
 
  0.594
DVU_0606
Transcriptional regulator, ArsR family/methyltransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01022; match to protein family HMM PF01209 (307 aa)
   
 
  0.580
DVU_3310
ATP-dependent RNA helicase, DEAD/DEAH family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family (532 aa)
   
 
  0.575
DVU_3088
ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271 (577 aa)
   
 
  0.575
rhlE
ATP-dependent RNA helicase RhlE; Identified by similarity to SP-P25888; match to protein family HMM PF00270; match to protein family HMM PF00271 (462 aa)
   
 
  0.575
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP (515 aa)
   
   
  0.568
groEL
60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions (547 aa)
   
 
  0.567
dnaK
Chaperone protein DnaK; Acts as a chaperone (636 aa)
       
 
  0.532
DVU_0101
Methlytransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209 (508 aa)
   
 
  0.532
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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