STRINGSTRING
DVU_2306 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2306" - Identified by similarity to GP:15026158 in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2306Identified by similarity to GP-15026158; match to protein family HMM PF01384 (336 aa)    
Predicted Functional Partners:
DVU_2305
Uncharacterized protein; Identified by similarity to OMNI-NTL01RS1312; match to protein family HMM PF01865 (209 aa)
 
     
  0.973
DVU_1999
Identified by similarity to OMNI-VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740 (714 aa)
     
   
  0.755
DVU_2958
Probable membrane transporter protein; Identified by match to protein family HMM PF01925 (332 aa)
         
  0.729
poR
Pyruvate synthase; Identified by similarity to GP-1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855 (1215 aa)
         
  0.644
DVU_0279
Identified by similarity to SP-P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815 (568 aa)
     
   
  0.633
DVU_2304
Uncharacterized protein; Identified by Glimmer2; putative (78 aa)
              0.608
DVU_2303
annotation not available (475 aa)
              0.595
DVU_0053
Sulfate permease, putative; Identified by similarity to OMNI-CT0714; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815 (653 aa)
     
   
  0.582
ribAB
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family (409 aa)
     
   
  0.582
DVU_0606
Transcriptional regulator, ArsR family/methyltransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01022; match to protein family HMM PF01209 (307 aa)
   
   
  0.543
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (22%) [HD]