STRINGSTRING
DVU_2421 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2421" - Identified by match to protein family HMM PF01361 in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2421Identified by match to protein family HMM PF01361; Belongs to the 4-oxalocrotonate tautomerase family (65 aa)    
Predicted Functional Partners:
DVU_2422
Identified by match to protein family HMM PF00881 (169 aa)
              0.850
DVU_2420
Uncharacterized protein; Identified by similarity to OMNI-NTL02ML3469 (109 aa)
 
          0.652
DVU_2423
Transcriptional regulator, putative; Identified by match to protein family HMM PF01638 (159 aa)
              0.627
DVU_1545
Hemolysin-type calcium-binding repeat/calx-beta domain protein; Identified by match to protein family HMM PF00353; match to protein family HMM PF03160; match to protein family HMM TIGR01612 (2414 aa)
   
          0.540
DVU_0665
Nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (281 aa)
         
  0.532
DVU_1266
Uncharacterized protein; Identified by Glimmer2; putative (1145 aa)
   
          0.531
polA
DNA polymerase I; Identified by similarity to SP-P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 (1015 aa)
         
  0.507
DVU_2898
Uncharacterized protein; Identified by similarity to OMNI-NTL01MM1125 (333 aa)
   
          0.502
DVU_1523
Uncharacterized protein; Identified by Glimmer2; putative (342 aa)
   
          0.462
DVU_1547
Sensory box protein; Identified by match to protein family HMM PF00785; match to protein family HMM TIGR00229 (541 aa)
   
          0.440
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (27%) [HD]