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DVU_2551 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2551" - HD domain protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2551HD domain protein; Identified by match to protein family HMM PF01966 (397 aa)    
Predicted Functional Partners:
DVU_0667
HD domain protein; Identified by match to protein family HMM PF01966 (329 aa)
   
          0.783
DVU_3068
GAF domain/sensory box/EAL domain protein; Identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 (827 aa)
 
 
  0.565
DVU_3106
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (655 aa)
      0.492
DVU_2432
Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 (1413 aa)
 
 
  0.469
DVU_0940
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (243 aa)
      0.469
DVU_2954
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (559 aa)
 
      0.456
DVU_1959
EAL domain/GGDEF domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254 (797 aa)
 
 
 
  0.455
DVU_2016
GGDEF domain protein; Identified by match to protein family HMM PF00990 (293 aa)
 
 
      0.451
DVU_1786
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (352 aa)
 
  0.440
DVU_0416
GGDEF domain protein; Identified by similarity to GP-1119215; match to protein family HMM PF00990; match to protein family HMM TIGR00254 (372 aa)
      0.431
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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