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DVU_2554 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2554" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2554Uncharacterized protein; Identified by similarity to OMNI-NTL01FN0863 (294 aa)    
Predicted Functional Partners:
DVU_2555
MATE efflux family protein; Identified by similarity to OMNI-NTL01RSA1213; match to protein family HMM PF01554; match to protein family HMM TIGR00797 (473 aa)
              0.886
DVU_2556
Uncharacterized protein; Identified by Glimmer2; putative (122 aa)
              0.571
DVU_2553
Identified by match to protein family HMM PF01106 (81 aa)
              0.571
DVU_0462
Chorismate mutase/prephenate dehydratase; Identified by similarity to SP-P07022; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807 (391 aa)
              0.476
DVU_0040
Uncharacterized protein; Identified by Glimmer2; putative (204 aa)
   
          0.406
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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