STRINGSTRING
DVU_2688 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2688" - Identified by similarity to SP:P07636 in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2688Identified by similarity to SP-P07636; match to protein family HMM PF00665 (680 aa)    
Predicted Functional Partners:
DVU_2689
Bacteriophage DNA transposition B protein; Identified by similarity to SP-P03763 (261 aa)
 
     
  0.968
DVU_2690
Uncharacterized protein; Identified by Glimmer2; putative (195 aa)
              0.853
DVU_2695
annotation not available (138 aa)
 
          0.843
DVU_2696
Uncharacterized protein; Identified by similarity to OMNI-NMB1083 (162 aa)
 
          0.837
DVU_2706
Uncharacterized protein; Identified by similarity to OMNI-NTL01NM01730; match to protein family HMM PF06074 (572 aa)
 
     
  0.826
DVU_2704
Uncharacterized protein; Identified by similarity to OMNI-NMB1092 (172 aa)
 
          0.825
DVU_2707
Virion morphogenesis protein; Identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641 (416 aa)
 
          0.825
DVU_2705
Phage uncharacterized protein; Identified by match to protein family HMM TIGR01630 (558 aa)
 
          0.823
DVU_2708
Virion morphogenesis protein; Identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635 (162 aa)
 
          0.812
DVU_1139
Bacteriophage DNA transposition B protein, putative; Identified by similarity to GP-974770 (245 aa)
 
     
  0.798
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (11%) [HD]