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livM protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"livM" - High-affinity branched chain amino acid ABC transporter, permease protein in Desulfovibrio vulgaris Hildenborough
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livMHigh-affinity branched chain amino acid ABC transporter, permease protein; Identified by similarity to SP-P22729; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family (358 aa)    
Predicted Functional Partners:
livG
High-affinity branched chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP-P22730; match to protein family HMM PF00005 (255 aa)
 
  0.997
livF
High-affinity branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP-P21630; match to protein family HMM PF00005 (241 aa)
 
  0.997
livH
High-affinity branched-chain amino acid ABC ransporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family (306 aa)
 
  0.996
DVU_0548
High-affinity branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP-P08340; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family (302 aa)
 
  0.986
DVU_2744
High-affinity branched-chain amino acid ABC transporter, perisplasmic amino acid binding protein; Identified by match to protein family HMM PF01094 (385 aa)
 
 
  0.984
DVU_0715
Branched-chain amino acid ABC transporter, ATP binding protein; Identified by similarity to SP-P22730; match to protein family HMM PF00005 (255 aa)
 
  0.982
DVU_0550
High-affinity branched-chain amino acid ABC transporter, ATP binding protein; Identified by similarity to SP-P22730; match to protein family HMM PF00005 (262 aa)
 
  0.979
DVU_0551
High-affinity branched-chain amino acid ABC transporter ATP-binding protein; Identified by similarity to SP-P22731; match to protein family HMM PF00005 (234 aa)
 
  0.976
DVU_0716
Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP-P22731; match to protein family HMM PF00005 (238 aa)
 
  0.975
DVU_0713
Branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP-P08340; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family (301 aa)
 
0.968
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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