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DVU_2868 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2868" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2868Uncharacterized protein; Identified by Glimmer2; putative (115 aa)    
Predicted Functional Partners:
DVU_0200
Major head protein; Identified by match to protein family HMM PF03864 (334 aa)
              0.845
DVU_2867
Holin; Identified by match to protein family HMM TIGR01593 (162 aa)
              0.845
DVU_2873
Uncharacterized protein; Identified by Glimmer2; putative (91 aa)
              0.837
DVU_2872
Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539 (566 aa)
              0.837
DVU_2871
Identified by match to protein family HMM PF01343 (439 aa)
              0.837
DVU_0199
Uncharacterized protein; Identified by similarity to OMNI-NTL01RS0859 (127 aa)
              0.837
DVU_2866
Uncharacterized protein; Identified by similarity to GP-6714967; match to protein family HMM PF05838 (182 aa)
              0.792
DVU_2865
annotation not available (136 aa)
              0.755
DVU_2864
Uncharacterized protein; Identified by Glimmer2; putative (47 aa)
              0.725
DVU_0206
Uncharacterized protein; Identified by Glimmer2; putative (197 aa)
              0.725
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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