STRINGSTRING
DVU_2911 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2911" - Identified by match to protein family HMM PF01479 in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2911Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 (253 aa)    
Predicted Functional Partners:
DVU_0395
HIT family protein; Identified by similarity to SP-O07513; match to protein family HMM PF01230 (139 aa)
          0.779
rpmE
50S ribosomal protein L31; Binds the 23S rRNA (71 aa)
   
   
  0.559
DVU_2148
CBS/transporter associated domain protein; Identified by similarity to SP-P39319; match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 (464 aa)
   
   
  0.533
DVU_1091
Uncharacterized protein; Identified by similarity to OMNI-NTL03CP2210 (368 aa)
           
  0.529
DVU_2913
annotation not available (335 aa)
 
          0.493
metG
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (663 aa)
 
        0.492
DVU_3053
tRNA (adenine(58)-N(1))-methyltransferase TrmI; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA (297 aa)
 
     
  0.431
DVU_0838
UPF0109 protein DVU_0838; Identified by similarity to SP-Q8XJP5 (77 aa)
 
        0.424
DVU_1349
Geranylgeranyl diphosphate synthase; Identified by similarity to GP-5631295; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family (287 aa)
 
   
  0.418
rnj
Ribonuclease J; An RNase that has 5’-3’ exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay; Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily (554 aa)
 
        0.416
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (25%) [HD]