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DVU_3007 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_3007" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3007Uncharacterized protein; Identified by Glimmer2; putative (407 aa)    
Predicted Functional Partners:
DVU_3009
Radical SAM domain protein; Identified by match to protein family HMM PF04055 (327 aa)
     
      0.960
DVU_3006
Polysaccharide biosynthesis protein/methyltransferase, putative; Identified by similarity to SP-P39626; similar to GP-10179847; match to protein family HMM PF02348 (453 aa)
     
      0.858
DVU_3008
Identified by match to protein family HMM PF03102 (358 aa)
              0.845
DVU_3011
Uncharacterized protein; Identified by similarity to OMNI-CC2858 (264 aa)
              0.841
DVU_3010
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by similarity to GP-22095313; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family (392 aa)
              0.837
DVU_3005
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family (344 aa)
              0.832
DVU_3004
Radical SAM domain protein; Identified by match to protein family HMM PF04055 (624 aa)
              0.818
DVU_0283
AhpF family protein/thioredoxin reductase; Identified by similarity to SP-P80880; match to protein family HMM PF00070; match to protein family HMM TIGR01292; Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family (661 aa)
   
 
  0.816
polA
DNA polymerase I; Identified by similarity to SP-P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 (1015 aa)
   
   
  0.727
arsC
Arsenate reductase; Identified by similarity to SP-P45947; match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family (147 aa)
   
 
  0.608
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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