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DVU_3008 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_3008" - Identified by match to protein family HMM PF03102 in Desulfovibrio vulgaris Hildenborough
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_3008Identified by match to protein family HMM PF03102 (358 aa)    
Predicted Functional Partners:
DVU_3006
Polysaccharide biosynthesis protein/methyltransferase, putative; Identified by similarity to SP-P39626; similar to GP-10179847; match to protein family HMM PF02348 (453 aa)
 
        0.972
DVU_3010
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by similarity to GP-22095313; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family (392 aa)
   
  0.899
DVU_0351
Identified by similarity to SP-P39627; similar to GP-4741793 (544 aa)
 
   
  0.893
DVU_3005
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family (344 aa)
   
  0.893
DVU_3004
Radical SAM domain protein; Identified by match to protein family HMM PF04055 (624 aa)
 
          0.881
DVU_3011
Uncharacterized protein; Identified by similarity to OMNI-CC2858 (264 aa)
 
          0.878
DVU_3009
Radical SAM domain protein; Identified by match to protein family HMM PF04055 (327 aa)
 
          0.879
DVU_3007
Uncharacterized protein; Identified by Glimmer2; putative (407 aa)
              0.845
spsF
Spore coat polysaccharide biosynthesis protein spsF; Identified by match to protein family HMM PF02348 (227 aa)
          0.805
DVU_3003
Radical SAM domain protein; Identified by match to protein family HMM PF04055 (370 aa)
 
          0.669
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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