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pqiB protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"pqiB" - Paraquat-inducible protein B in Desulfovibrio vulgaris Hildenborough
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pqiBParaquat-inducible protein B; Identified by similarity to SP-P43671 (543 aa)    
Predicted Functional Partners:
DVU_3128
Lipoprotein, putative; Identified by similarity to OMNI-NTL03PA04964; match to protein family HMM PF03886 (205 aa)
 
   
  0.979
DVU_3129
Uncharacterized protein; Identified by Glimmer2; putative (55 aa)
              0.816
DVU_1243
Uncharacterized protein; Identified by similarity to GP-22799047 (210 aa)
   
 
  0.695
DVU_1246
Membrane protein, putative; Identified by similarity to OMNI-NTL01AA00252; match to protein family HMM PF02405; match to protein family HMM TIGR00056 (267 aa)
   
 
  0.683
DVU_0612
STAS domain protein; Identified by similarity to GP-9106294; match to protein family HMM PF01740; match to protein family HMM PF02405; match to protein family HMM TIGR00056 (406 aa)
   
 
  0.683
DVU_3130
Uncharacterized protein; Identified by Glimmer2; putative (70 aa)
              0.596
DVU_1012
Hemolysin-type calcium-binding repeat protein; Identified by match to protein family HMM PF00092; match to protein family HMM PF00353; match to protein family HMM TIGR01612 (3038 aa)
         
  0.529
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP (515 aa)
         
  0.509
DVU_3257
DNA internalization-related competence protein ComEC/Rec2; Identified by similarity to SP-P39695; match to protein family HMM TIGR00360 (974 aa)
              0.475
poR
Pyruvate synthase; Identified by similarity to GP-1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855 (1215 aa)
     
        0.400
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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