STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW75799.1Two-component response regulator; COG: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; Pfam: Bacterial regulatory protein, Fis family::PF02954<br>Sigma-54 interaction domain::PF00158. (371 aa)    
Predicted Functional Partners:
CBW75506.1
Transcriptional regulatory protein fixJ; COG: Response regulator; Pfam: Bacterial regulatory proteins, luxR family::PF00196<br>Response regulator receiver domain::PF00072.
 
   
 0.913
CBW76373.1
Unnamed protein product; COG: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; Pfam: Response regulator receiver domain::PF00072.
 
     0.898
CBW75148.1
Unnamed protein product; COG: FOG: CheY-like receiver; Pfam: Response regulator receiver domain::PF00072.
  
 
 0.858
CBW74770.1
RNA polymerase sigma-54 factor rpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
   
 0.778
CBW76122.1
RNA polymerase sigma-54 factor rpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
   
 0.777
CBW75800.1
Unnamed protein product.
       0.773
CBW75240.1
Unnamed protein product.
  
 
 0.686
CBW74763.1
Sensory transduction protein kinase (EC 2.7.3.-); COG: FOG: PAS/PAC domain; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase::PF02518<br>His Kinase A (phosphoacceptor) domain::PF00512<br>PAS fold::PF00989<br>PAS fold::PF08448<br>Response regulator receiver domain::PF00072.
 
 
 0.616
CBW75797.1
Two-component response regulator pilR; COG: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; Pfam: Bacterial regulatory protein, Fis family::PF02954<br>Response regulator receiver domain::PF00072<br>Sigma-54 interaction domain::PF00158.
 
    
0.589
CBW75798.1
Unnamed protein product.
       0.561
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.