STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW74314.1Sigma-E factor regulatory protein rseB precursor; COG: Negative regulator of sigma E activity; Pfam: MucB/RseB family::PF03888. (359 aa)    
Predicted Functional Partners:
CBW74313.1
RseA_N domain-containing protein; Unnamed protein product; COG: Negative regulator of sigma E activity.
  
 
 0.996
CBW74312.1
RNA polymerase sigma-E factor; COG: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Pfam: Sigma-70 region 2::PF04542<br>Sigma-70, region 4::PF04545<br>Sigma-70, region 4::PF08281; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.910
CBW74315.1
Endopeptidase degP (EC 3.4.21.-); COG: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Pfam: PDZ domain (Also known as DHR or GLGF)::PF00595<br>Trypsin::PF00089; Belongs to the peptidase S1C family.
  
  
 0.757
lepA
GTP-binding protein lepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.704
CBW74316.1
Glutaredoxin; Pfam: Glutaredoxin-like domain (DUF836)::PF05768.
       0.704
CBW74310.1
3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
     
 0.678
CBW74317.1
Unnamed protein product.
       0.672
rnc
Ribonuclease III (EC 3.1.26.3); Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
       0.663
CBW74319.1
Signal peptidase I (EC 3.4.21.89); COG: Signal peptidase I; Pfam: Peptidase S24-like::PF00717; Belongs to the peptidase S26 family.
       0.663
CBW74311.1
Unnamed protein product.
       0.642
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.