STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1180KEGG: sfu:Sfum_0282 hypothetical protein. (156 aa)    
Predicted Functional Partners:
DvMF_0986
PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: gbm:Gbem_2040 2-hydroxyglutaryl-CoA dehydratase D-component.
 
     0.513
DvMF_0108
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dde:Dde_2226 LysR family transcriptional regulator.
  
     0.429
DvMF_0044
PFAM: ApbE family lipoprotein; KEGG: dde:Dde_2535 hypothetical protein.
  
    0.424
DvMF_0368
KEGG: dde:Dde_1959 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
  
     0.415
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.