STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1264PFAM: Transposase-like Mu; KEGG: dde:Dde_3350 bacteriophage transposase A protein, putative. (728 aa)    
Predicted Functional Partners:
DvMF_1265
KEGG: dde:Dde_3351 bacteriophage DNA transposition B protein, putative.
 
 
 0.982
DvMF_1268
PFAM: Mu Gam family protein; KEGG: dde:Dde_3354 host-nuclease inhibitor protein Gam, putative.
 
   
 0.943
DvMF_0714
KEGG: aav:Aave_4120 bacteriophage DNA transposition B protein.
 
 
 0.925
DvMF_1284
PFAM: protein of unknown function DUF935; KEGG: dde:Dde_3373 hypothetical protein.
 
  
 0.811
DvMF_1282
KEGG: dde:Dde_3372 portal protein, putative.
 
    0.802
DvMF_0735
KEGG: lip:LIC067 hypothetical protein.
 
  
 0.800
DvMF_1266
KEGG: dde:Dde_3352 hypothetical protein.
       0.791
DvMF_1285
TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7; KEGG: dde:Dde_3374 phage putative head morphogenesis protein, SPP1 gp7.
 
    0.782
DvMF_1267
Hypothetical protein.
       0.773
DvMF_1298
TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; KEGG: sew:SeSA_A4475 tail protein.
  
   
 0.772
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.