STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_2399PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: kpn:KPN_03853 ATP-binding protein of nickel transport system. (340 aa)    
Predicted Functional Partners:
DvMF_2400
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppw:PputW619_3007 nickel ABC transporter, permease subunit NikC.
 
 0.997
DvMF_2401
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mrd:Mrad2831_6075 nickel ABC transporter, permease subunit NikB.
 
 0.995
DvMF_0921
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2594 oligopeptide ABC transporter, permease protein.
  
 0.978
DvMF_2398
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A2273 nickel transporter ATP-binding protein.
 
 
0.978
DvMF_1827
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0273 oligopeptide/dipeptide ABC transporter, permease protein.
  
 0.963
DvMF_2402
KEGG: rru:Rru_A2277 nickel ABC transporter, periplasmic nickel-binding; TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein family 5.
 
 
 0.947
DvMF_0920
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2593 oligopeptide ABC transporter, permease protein.
 
 
 0.909
DvMF_0853
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2298 ATPase.
 
    
0.893
DvMF_1504
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pla:Plav_2513 ABC transporter related.
 
     
0.887
DvMF_1828
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0274 oligopeptide/dipeptide ABC transporter, permease protein.
 
 
 0.885
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.