STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USF3Upstream transcription factor family member 3. (1876 aa)    
Predicted Functional Partners:
MRPL34
Uncharacterized protein.
    
 
 0.660
MRPS14
Mitochondrial ribosomal protein S14.
    
 
 0.641
MRPL48
Mitochondrial ribosomal protein L48.
      
 0.622
UQCRB
Cytochrome b-c1 complex subunit 7; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain; Belongs to the UQCRB/QCR7 family.
   
  
 0.612
ATP5MF
ATP synthase membrane subunit f.
      
 0.611
NDUFB4
NADH:ubiquinone oxidoreductase subunit B4.
      
 0.587
ATP5ME
Uncharacterized protein.
      
 0.586
ATP5F1C
ATP synthase subunit gamma.
      
 0.586
CCT2
Chaperonin containing TCP1 subunit 2.
    
 
 0.557
RPLP1
Ribosomal protein lateral stalk subunit P1; Belongs to the eukaryotic ribosomal protein P1/P2 family.
     
 0.517
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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