ENSAPLP00000017710 protein (Anas platyrhynchos)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSAPLP00000017710

Uncharacterized protein. (290 aa)

Predicted Functional Partners:

GPATCH3

0.923

SAMD11

0.565

MVK

0.548

TSPAN12

0.495

RNF25

0.438

LGR4

0.437

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPLP00000017710	GPATCH3	ENSAPLP00000017710	ENSAPLP00000010474	Uncharacterized protein.	G-patch domain containing 3.	0.923
ENSAPLP00000017710	LGR4	ENSAPLP00000017710	ENSAPLP00000002700	Uncharacterized protein.	Leucine rich repeat containing G protein-coupled receptor 4.	0.437
ENSAPLP00000017710	MVK	ENSAPLP00000017710	ENSAPLP00000019686	Uncharacterized protein.	Mevalonate kinase; Catalyzes the phosphorylation of mevalonate to mevalonate 5- phosphate, a key step in isoprenoid and cholesterol biosynthesis. Belongs to the GHMP kinase family. Mevalonate kinase subfamily.	0.548
ENSAPLP00000017710	RNF25	ENSAPLP00000017710	ENSAPLP00000004587	Uncharacterized protein.	Ring finger protein 25.	0.438
ENSAPLP00000017710	SAMD11	ENSAPLP00000017710	ENSAPLP00000028184	Uncharacterized protein.	Sterile alpha motif domain containing 11.	0.565
ENSAPLP00000017710	TSPAN12	ENSAPLP00000017710	ENSAPLP00000002064	Uncharacterized protein.	Tetraspanin.	0.495
GPATCH3	ENSAPLP00000017710	ENSAPLP00000010474	ENSAPLP00000017710	G-patch domain containing 3.	Uncharacterized protein.	0.923
LGR4	ENSAPLP00000017710	ENSAPLP00000002700	ENSAPLP00000017710	Leucine rich repeat containing G protein-coupled receptor 4.	Uncharacterized protein.	0.437
LGR4	TSPAN12	ENSAPLP00000002700	ENSAPLP00000002064	Leucine rich repeat containing G protein-coupled receptor 4.	Tetraspanin.	0.495
MVK	ENSAPLP00000017710	ENSAPLP00000019686	ENSAPLP00000017710	Mevalonate kinase; Catalyzes the phosphorylation of mevalonate to mevalonate 5- phosphate, a key step in isoprenoid and cholesterol biosynthesis. Belongs to the GHMP kinase family. Mevalonate kinase subfamily.	Uncharacterized protein.	0.548
RNF25	ENSAPLP00000017710	ENSAPLP00000004587	ENSAPLP00000017710	Ring finger protein 25.	Uncharacterized protein.	0.438
SAMD11	ENSAPLP00000017710	ENSAPLP00000028184	ENSAPLP00000017710	Sterile alpha motif domain containing 11.	Uncharacterized protein.	0.565
TSPAN12	ENSAPLP00000017710	ENSAPLP00000002064	ENSAPLP00000017710	Tetraspanin.	Uncharacterized protein.	0.495
TSPAN12	LGR4	ENSAPLP00000002064	ENSAPLP00000002700	Tetraspanin.	Leucine rich repeat containing G protein-coupled receptor 4.	0.495