STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN34393.1Spore germination protein. (306 aa)    
Predicted Functional Partners:
senX3
Signal-transduction histidine kinase senX3.
 
    0.924
CUN34409.1
DNA internalization-related competence protein ComEC/Rec2.
 
     0.893
mreD
Predicted membrane protein.
  
     0.762
CUN94512.1
Uncharacterised protein.
  
     0.760
CUO33586.1
Uncharacterised protein.
  
     0.753
CUO06896.1
Uncharacterised protein.
  
     0.743
CUO32344.1
Uncharacterised protein.
  
     0.736
CUN51074.1
Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats.
  
     0.734
CUO02092.1
Putative membrane fusion protein.
 
     0.732
yycF_1
Transcriptional regulatory protein YycF.
 
     0.727
Your Current Organism:
Dorea longicatena
NCBI taxonomy Id: 88431
Other names: CCUG 45247, D. longicatena, DSM 13814, Dorea longicatena Taras et al. 2002, Eubacterium sp. III-35, JCM 11232, strain 111-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.