STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cycB_1Cyclodextrin-binding protein precursor. (440 aa)    
Predicted Functional Partners:
ugpA_2
Sn-glycerol-3-phosphate transport system permease protein ugpA.
 
  0.997
ugpC_1
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
 
 0.993
ycjP_2
Inner membrane ABC transporter permease protein ycjP.
 
  0.974
ycjP_6
Inner membrane ABC transporter permease protein ycjP.
 
  0.802
CUO37601.1
Glycerol-3-phosphate transporter permease.
 
  0.802
malG_2
Maltose transport system permease protein malG.
 
  0.769
ugpA_1
Sn-glycerol-3-phosphate transport system permease protein ugpA.
 
  0.763
ycjP_1
Inner membrane ABC transporter permease protein ycjP.
 
  0.761
ugpA_5
Sn-glycerol-3-phosphate transport system permease protein ugpA.
 
  0.755
ugpA_6
Sn-glycerol-3-phosphate transport system permease protein ugpA.
 
  0.749
Your Current Organism:
Dorea longicatena
NCBI taxonomy Id: 88431
Other names: CCUG 45247, D. longicatena, DSM 13814, Dorea longicatena Taras et al. 2002, Eubacterium sp. III-35, JCM 11232, strain 111-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.