STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lgrELinear gramicidin dehydrogenase LgrE. (248 aa)    
Predicted Functional Partners:
dhbE
2%2C3-dihydroxybenzoate-AMP ligase.
  
 0.999
mbtB_1
Phenyloxazoline synthase MbtB.
  
 0.998
sfp_2
4'-phosphopantetheinyl transferase sfp; Belongs to the P-Pant transferase superfamily.
 
  
 0.968
fabD
Malonyl CoA-acyl carrier protein transacylase.
 
 
 0.960
mbtB_2
Phenyloxazoline synthase MbtB.
  
 0.951
fabF
3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
   
 0.868
CUN37536.1
Alcohol acetyltransferase.
  
 
 0.841
fabK
Nitronate monooxygenase.
     
 0.827
CUN92767.1
Putative accessory gene regulator protein; Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide.
 
     0.740
sfp_1
4'-phosphopantetheinyl transferase sfp; Belongs to the P-Pant transferase superfamily.
 
  
 0.739
Your Current Organism:
Dorea longicatena
NCBI taxonomy Id: 88431
Other names: CCUG 45247, D. longicatena, DSM 13814, Dorea longicatena Taras et al. 2002, Eubacterium sp. III-35, JCM 11232, strain 111-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.