STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO03794.1DNA-binding transcriptional repressor PuuR. (218 aa)    
Predicted Functional Partners:
CUN38762.1
Putative zinc finger/helix-turn-helix protein%2C YgiT family.
  
     0.761
CUO03723.1
Uncharacterized conserved protein.
       0.532
CUO03758.1
DNA alkylation repair enzyme.
       0.532
CUO03818.1
Uncharacterised protein.
       0.503
sigM_3
RNA polymerase sigma factor sigM; Belongs to the sigma-70 factor family. ECF subfamily.
       0.503
porA
Pyruvate synthase subunit porA.
    
  0.444
CUO03624.1
Sensory histidine kinase DcuS.
 
     0.441
Your Current Organism:
Dorea longicatena
NCBI taxonomy Id: 88431
Other names: CCUG 45247, D. longicatena, DSM 13814, Dorea longicatena Taras et al. 2002, Eubacterium sp. III-35, JCM 11232, strain 111-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.