STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM69599.1Exo-alpha-sialidase; PFAM: BNR/Asp-box repeat; COGs: COG4409 Neuraminidase (sialidase); KEGG: coc:Coch_0016 exo-alpha-sialidase; SPTR: SiaC. (532 aa)    
Predicted Functional Partners:
AEM69598.1
PFAM: Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015882:IPR015883; KEGG: amu:Amuc_1815 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Acetylhexosaminidase, subunit a/b; SPTR: Beta-N-acetylhexosaminidase.
 
 
 0.951
AEM69597.1
PFAM: Kelch motif; Sodium:solute symporter family; TIGRFAM: transporter, SSS family; cyclically-permuted mutatrotase family protein; COGs: COG0591 Na+/proline symporter; InterPro IPR006652:IPR019900:IPR001734; KEGG: fbc:FB2170_03920 hypothetical protein; PFAM: Sodium/solute symporter; Kelch repeat type 1; SMART: Kelch repeat type 1; SPTR: Putative uncharacterized protein; TIGRFAM: Sodium/solute symporter, subgroup.
 
     0.925
AEM69600.1
PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819; KEGG: fbc:FB2170_03930 N-acyl-D-glucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; PRIAM: N-acylglucosamine 2-epimerase; SPTR: N-acyl-D-glucosamine 2-epimerase.
 
     0.887
AEM69601.1
GntR domain protein; PFAM: Bacterial regulatory proteins, gntR family; FCD domain; COGs: COG2186 Transcriptional regulators; InterPro IPR000524:IPR011711; KEGG: phe:Phep_3580 GntR domain protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal; SPTR: Putative GntR family regulatory protein.
 
     0.848
AEM69604.1
N-acetylneuraminate lyase; PFAM: Dihydrodipicolinate synthetase family; COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: fbc:FB2170_03935 putative N-acetylneuraminate lyase (sialic acid lyase); PFAM: Dihydrodipicolinate synthetase; PRIAM: N-acetylneuraminate lyase; SPTR: Putative N-acetylneuraminate lyase (Sialic acid lyase); Belongs to the DapA family.
 
   
 0.772
AEM69602.1
RagB/SusD domain-containing protein; PFAM: SusD family; InterPro IPR012944; KEGG: sli:Slin_2626 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein.
  
     0.707
AEM69603.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012910:IPR000531; KEGG: pdi:BDI_2944 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Putative outer membrane protein probably involved in nutrient binding.
  
     0.705
AEM72161.1
PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR006935:IPR001650:IPR014001; KEGG: fbc:FB2170_11286 hypothetical protein; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: Putative uncharacterized protein.
   
    0.673
AEM69594.1
Alpha-L-fucosidase; PFAM: F5/8 type C domain; Alpha-L-fucosidase; COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933:IPR000421; KEGG: fbc:FB2170_02090 putative lipoprotein; PFAM: Coagulation factor 5/8 type, C-terminal; Glycoside hydrolase, family 29; PRIAM: Alpha-L-fucosidase; SMART: Glycoside hydrolase, family 29; SPTR: Putative lipoprotein.
 
  
 0.608
AEM69596.1
PFAM: LrgA family; COGs: COG1380 Putative effector of murein hydrolase LrgA; InterPro IPR005538; KEGG: zpr:ZPR_4312 putative transmembrane protein; PFAM: Uncharacterised protein family LrgA/YohJ; SPTR: Putative transmembrane protein.
 
     0.595
Your Current Organism:
Muricauda ruestringensis
NCBI taxonomy Id: 886377
Other names: M. ruestringensis DSM 13258, Muricauda ruestringensis B1, Muricauda ruestringensis DSM 13258, Muricauda ruestringensis str. DSM 13258, Muricauda ruestringensis strain DSM 13258
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