STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMD92290.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (271 aa)    
Predicted Functional Partners:
AMD92289.1
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.576
AMD93993.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.538
hemL
Glutamate-1-semialdehyde aminotransferase; Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.524
AMD92288.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.512
Your Current Organism:
Desulfomicrobium orale
NCBI taxonomy Id: 888061
Other names: D. orale DSM 12838, Desulfomicrobium orale DSM 12838, Desulfomicrobium orale str. DSM 12838, Desulfomicrobium orale strain DSM 12838
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.