STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APR81201.1UvrD/Rep helicase family protein. (703 aa)    
Predicted Functional Partners:
APR84337.1
UvrD/Rep helicase family protein.
  
  
 
0.920
APR79975.1
ATP-dependent DNA helicase UvrD/PcrA.
    
 0.919
APR83202.1
ATP-dependent DNA helicase Rep.
    
 0.919
rpoB
DNA-directed RNA polymerase beta subunit protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.896
rpoZ
DNA-directed RNA polymerase omega subunit protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
   0.829
rpoA
DNA-directed RNA polymerase alpha subunit protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.806
APR86511.1
Hypothetical protein.
  
     0.749
APR83460.1
Hypothetical protein.
  
     0.736
APR78292.1
DNA-directed RNA polymerase beta' subunit protein.
    
 
 0.718
rpoC
DNA-directed RNA polymerase beta' subunit protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.718
Your Current Organism:
Minicystis rosea
NCBI taxonomy Id: 888845
Other names: DSM 24000, M. rosea, Minicystis rosea Garcia et al. 2014, NCCB 100349, Sorangiineae bacterium SBNa008, strain SBNa008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.