STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP78911.1Competence protein ComGC. (117 aa)    
Predicted Functional Partners:
SEP78946.1
Type II secretion system (T2SS), protein F.
 
  
 0.975
SEP78979.1
Competence protein ComGA.
  
  
 0.964
SEP78642.1
Hypothetical protein.
  
  
 0.963
SEP78875.1
Hypothetical protein.
       0.802
SEQ13215.1
Competence protein ComFA.
 
  
 0.798
SEP78677.1
Hypothetical protein.
       0.773
SEQ53830.1
Metallo-beta-lactamase superfamily protein.
   
  
 0.768
SEQ53804.1
Competence protein ComEA.
   
  
 0.717
SEQ56201.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A.
  
  
 0.715
SEQ13187.1
Competence protein ComFC.
  
  
 0.643
Your Current Organism:
Ignavigranum ruoffiae
NCBI taxonomy Id: 89093
Other names: ATCC 700630, CCUG 37658, CIP 105896, DSM 15695, I. ruoffiae
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.