STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ42059.13-hydroxybutyryl-CoA dehydratase. (132 aa)    
Predicted Functional Partners:
SEQ09987.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.959
SEQ58560.1
3-hydroxyisobutyryl-CoA hydrolase.
  
 0.959
SEQ36847.1
htrA-like peptidase. Serine peptidase. MEROPS family S01B.
    
  0.863
SEQ20567.1
Catalase.
   
 0.812
SEQ04182.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.785
SEQ09955.1
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.785
SEQ23609.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.785
SEQ42002.1
Polyhydroxyalkanoate synthase.
 
 
 0.764
SEQ04245.1
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.733
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
 
 0.732
Your Current Organism:
Ignavigranum ruoffiae
NCBI taxonomy Id: 89093
Other names: ATCC 700630, CCUG 37658, CIP 105896, DSM 15695, I. ruoffiae
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