STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_01565Response regulator receiver protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. (271 aa)    
Predicted Functional Partners:
ISM_05545
Histidine kinase/response regulator hybrid protein; COG2202 FOG: PAS/PAC domain.
 
 0.971
ISM_00215
Hypothetical protein; COG2199 FOG: GGDEF domain.
  
 0.966
ISM_01580
COG3920 Signal transduction histidine kinase.
 
  
 0.964
ISM_00280
Sensor histidine kinase of two-component; COG2202 FOG: PAS/PAC domain.
 
 0.953
ISM_04775
Two-component hybrid sensor and regulator; COG0642 Signal transduction histidine kinase.
  
 0.946
ISM_06625
Response regulator; COG0784 FOG: CheY-like receiver.
  
 0.944
ISM_07425
Putative two-component system sensor histidine kinase; COG2203 FOG: GAF domain.
 
  
 0.939
ISM_05685
Hypothetical protein; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
 0.926
ISM_01200
COG1868 Flagellar motor switch protein.
  
 0.913
ISM_06925
Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
  
 0.897
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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