STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09215Glycosyl hydrolase, BNR repeat protein; COG4692 Predicted neuraminidase (sialidase). (379 aa)    
Predicted Functional Partners:
ISM_09210
Alcohol dehydrogenase, zinc-containing; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
       0.773
ISM_09220
Hypothetical protein; COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit.
       0.701
ISM_09205
Hypothetical protein.
       0.580
ISM_13920
Hypothetical protein.
 
     0.498
ISM_16865
COG3119 Arylsulfatase A and related enzymes.
 
  
  0.418
ISM_03645
Sulfatase; COG3119 Arylsulfatase A and related enzymes.
 
  
  0.415
ISM_11000
Phosphonate monoester hydrolase, putative; COG3119 Arylsulfatase A and related enzymes.
 
  
  0.407
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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