STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_16905COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases. (379 aa)    
Predicted Functional Partners:
ISM_00405
Putative D-lactate dehydrogenase (cytochrome), FAD/FMN-containingoxidoreductase; COG0277 FAD/FMN-containing dehydrogenases.
  
 0.962
ISM_16910
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
  
 
 0.948
ISM_09586
Malate dehydrogenase; COG0281 Malic enzyme.
    
 0.938
ISM_02615
COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.932
ISM_08575
L-lactate dehydrogenase, putative; COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.
  
  
 
0.921
ISM_05245
Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
     
 0.914
ISM_09846
Pyruvate phosphate dikinase; COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase.
     
 0.911
ISM_04010
Putative glycolate oxidase; COG0277 FAD/FMN-containing dehydrogenases.
  
 0.883
ISM_11825
FAD dependent oxidoreductase; COG0277 FAD/FMN-containing dehydrogenases.
 
 0.780
ISM_05130
Oxidoreductase, FAD-binding protein; COG0277 FAD/FMN-containing dehydrogenases.
 
 0.776
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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