STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A306_00013100Uncharacterized protein. (813 aa)    
Predicted Functional Partners:
PIKFYVE
Phosphoinositide kinase, FYVE finger containing.
    
 0.981
FIG4
FIG4 phosphoinositide 5-phosphatase.
    
 0.953
A306_00000843
Polyphosphoinositide phosphatase.
    
 0.953
CUNH3orf58
PIP49_C domain-containing protein.
    
 0.893
RAD54L
Uncharacterized protein.
 
  
   0.862
YARS
Tyrosine--tRNA ligase.
      
 0.681
WIPI1
WD repeat domain, phosphoinositide interacting 1, transcript variant X1.
    
 
 0.670
STK40
Serine/threonine kinase 40.
   
 
 0.660
SOAT1
O-acyltransferase.
      
 0.656
WIPI2
WD repeat domain, phosphoinositide interacting 2, transcript variant X2.
    
 
 0.640
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.