STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPM1DProtein phosphatase, Mg2+/Mn2+ dependent, 1D. (461 aa)    
Predicted Functional Partners:
CBFB
Core-binding factor, beta subunit, transcript variant X2.
     
 0.655
CHEK2
Checkpoint kinase 2, transcript variant X1.
    
 
 0.643
RUNX3
Runt-related transcription factor.
    
 0.585
RUNX1
Runt-related transcription factor.
    
 0.585
RUNX2
Runt-related transcription factor.
    
 0.585
ATM
Non-specific serine/threonine protein kinase.
      
 0.541
APPBP2
Amyloid beta protein (Cytoplasmic tail) binding protein 2, transcript variant X1.
   
 0.526
UBE2V1
Ubiquitin-conjugating enzyme E2 variant 1.
     
 0.483
MDM2
E3 ubiquitin-protein ligase Mdm2; Belongs to the MDM2/MDM4 family.
   
 
 0.458
CHEK1
Checkpoint kinase 1.
    
 
 0.449
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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