STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX20Sorting nexin 20, transcript variant X1. (328 aa)    
Predicted Functional Partners:
GPATCH3
G patch domain containing 3.
      
 0.518
SNX29
Sorting nexin 29.
   
 0.468
EFCAB1
EF-hand calcium binding domain 1.
      
 0.465
PLEKHA8
Pleckstrin homology domain containing, family A (Phosphoinositide binding specific) member 8.
      
 0.447
ENTPD3
Ectonucleoside triphosphate diphosphohydrolase 3; Belongs to the GDA1/CD39 NTPase family.
      
 0.444
BRD7
Bromodomain containing 7.
      
 0.422
RSPRY1
Ring finger and SPRY domain containing 1.
      
 0.418
ARL2BP
ADP-ribosylation factor-like 2 binding protein.
      
 0.408
EAF1
ELL associated factor 1.
      
 0.404
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.