STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDCD5Programmed cell death 5. (200 aa)    
Predicted Functional Partners:
SNRPE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
    0.879
RPS11
Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
   
    0.854
RPL30
Ribosomal protein L30.
   
    0.833
RPL35
Ribosomal protein L35.
   
    0.813
RPL23
Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
   
  
 0.798
RPS3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
    0.791
RPL34
Ribosomal protein L34.
   
    0.786
RPL26L1
Ribosomal protein L26-like 1.
   
    0.785
A306_00013748
Putative LOC102091224.
   
    0.777
RPL23A
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
    0.773
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.