STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBX1T-box 1. (222 aa)    
Predicted Functional Partners:
NKX2-5
NK2 homeobox 5.
    
 
 0.558
A306_00006566
Homeobox protein HMX3.
    
 
 0.549
GNB1L
Guanine nucleotide binding protein (G protein), beta polypeptide 1-like.
      
 0.537
CFAP54
Cilia and flagella associated 54.
   
  
 0.536
RCHY1
Ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase.
   
    0.509
TMEM26
Transmembrane protein 26.
      
 0.461
RPUSD4
RNA pseudouridylate synthase domain containing 4.
      
 0.455
CRKL
V-crk avian sarcoma virus CT10 oncogene homolog-like.
      
 0.445
ISL1
ISL LIM homeobox 1.
    
 
 0.430
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.