LRFN2 protein (Columba livia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LRFN2

Leucine rich repeat and fibronectin type III domain containing 2. (763 aa)

Predicted Functional Partners:

GRIN1

0.714

A306_00015034

0.673

ADGRL3

0.673

ADGRL2

0.673

A306_00015032

0.642

GRIN2A

0.530

GP9

0.516

GRIN2C

0.512

A306_00011695

0.496

DLG2

0.496

Your Current Organism:

Columba livia

NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A306_00011695	A306_00015032	A0A2I0M110	A0A2I0LI38	Putative LOC102092492.	Leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein.	0.410
A306_00011695	GRIN1	A0A2I0M110	A0A2I0LT00	Putative LOC102092492.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1.	0.801
A306_00011695	GRIN2A	A0A2I0M110	A0A2I0M4C3	Putative LOC102092492.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A.	0.697
A306_00011695	GRIN2C	A0A2I0M110	A0A2I0M7A1	Putative LOC102092492.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2C.	0.521
A306_00011695	LRFN2	A0A2I0M110	A0A2I0MAM5	Putative LOC102092492.	Leucine rich repeat and fibronectin type III domain containing 2.	0.496
A306_00015032	A306_00011695	A0A2I0LI38	A0A2I0M110	Leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein.	Putative LOC102092492.	0.410
A306_00015032	A306_00015034	A0A2I0LI38	A0A2I0LIB2	Leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein.	Latrophilin-1-like; Belongs to the G-protein coupled receptor 2 family.	0.673
A306_00015032	ADGRL2	A0A2I0LI38	A0A2I0ME39	Leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein.	Adhesion G protein-coupled receptor L2, transcript variant X1; Belongs to the G-protein coupled receptor 2 family.	0.673
A306_00015032	ADGRL3	A0A2I0LI38	A0A2I0LUM3	Leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein.	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	0.673
A306_00015032	DLG2	A0A2I0LI38	A0A2I0M118	Leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein.	Uncharacterized protein.	0.410
A306_00015032	GRIN1	A0A2I0LI38	A0A2I0LT00	Leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1.	0.613
A306_00015032	LRFN2	A0A2I0LI38	A0A2I0MAM5	Leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein.	Leucine rich repeat and fibronectin type III domain containing 2.	0.642
A306_00015034	A306_00015032	A0A2I0LIB2	A0A2I0LI38	Latrophilin-1-like; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein.	0.673
A306_00015034	GP9	A0A2I0LIB2	A0A2I0LTX2	Latrophilin-1-like; Belongs to the G-protein coupled receptor 2 family.	Glycoprotein IX (Platelet), transcript variant X1.	0.673
A306_00015034	LRFN2	A0A2I0LIB2	A0A2I0MAM5	Latrophilin-1-like; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat and fibronectin type III domain containing 2.	0.673
ADGRL2	A306_00015032	A0A2I0ME39	A0A2I0LI38	Adhesion G protein-coupled receptor L2, transcript variant X1; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein.	0.673
ADGRL2	GP9	A0A2I0ME39	A0A2I0LTX2	Adhesion G protein-coupled receptor L2, transcript variant X1; Belongs to the G-protein coupled receptor 2 family.	Glycoprotein IX (Platelet), transcript variant X1.	0.673
ADGRL2	LRFN2	A0A2I0ME39	A0A2I0MAM5	Adhesion G protein-coupled receptor L2, transcript variant X1; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat and fibronectin type III domain containing 2.	0.673
ADGRL3	A306_00015032	A0A2I0LUM3	A0A2I0LI38	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein.	0.673
ADGRL3	GP9	A0A2I0LUM3	A0A2I0LTX2	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Glycoprotein IX (Platelet), transcript variant X1.	0.673