STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISPDIsoprenoid synthase domain containing. (325 aa)    
Predicted Functional Partners:
UBE2V1
Ubiquitin-conjugating enzyme E2 variant 1.
   
 
 0.920
XPC
Xeroderma pigmentosum, complementation group C.
    
 0.852
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.754
MCM3AP
Minichromosome maintenance complex component 3 associated protein.
    
 
 0.730
SFI1
SFI1 centrin binding protein.
    
 
 0.725
ENY2
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
   
 
 0.724
CASK
Calcium/calmodulin-dependent serine protein kinase (MAGUK family), transcript variant X1; Belongs to the MAGUK family.
    
 0.714
PCID2
PCI domain containing 2.
    
 
 0.631
NME8
NME/NM23 family member 8; Belongs to the NDK family.
   
 
 0.616
ERCC3
Excision repair cross-complementation group 3.
    
 0.581
Your Current Organism:
Columba livia
NCBI taxonomy Id: 8932
Other names: C. livia, Columba domestica, Columba livia domestica, carrier pigeon, domestic pigeon, rock dove, rock pigeon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.