STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA16769.1Hypothetical protein. (310 aa)    
Predicted Functional Partners:
SDZ91601.1
TRAP transporter, 4TM/12TM fusion protein.
    0.824
SEA00394.1
TRAP transporter, 4TM/12TM fusion protein.
    0.804
SDZ82469.1
TRAP transporter, 4TM/12TM fusion protein.
    0.796
SEA00424.1
Hypothetical protein.
  
     0.769
SEA91690.1
PAS domain S-box-containing protein.
    
  0.725
SEA16796.1
Protein of unknown function.
     0.695
SDZ82512.1
Hypothetical protein.
  
     0.629
SEA16826.1
Uncharacterized conserved protein, AIM24 family.
       0.545
SDZ91628.1
Nucleotide-binding universal stress protein, UspA family.
 
    0.410
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.