STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA64142.1Predicted dehydrogenase. (359 aa)    
Predicted Functional Partners:
SEA89120.1
NADH dehydrogenase.
   
 
  0.714
SEA65127.1
Predicted dehydrogenase.
  
     0.681
SDZ99388.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.670
SEA32420.1
Sugar phosphate isomerase/epimerase.
 
 
 0.633
SEA64536.1
Predicted dehydrogenase.
  
     0.618
rnhA
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
      0.612
SDZ75863.1
Aldose 1-epimerase.
 
 
 0.582
SEA09075.1
Myo-inositol-1(or 4)-monophosphatase.
  
  
  0.581
SEA44166.1
Sugar phosphate isomerase/epimerase.
  
 
 0.562
SEA61177.1
Sugar phosphate isomerase/epimerase.
  
 
 0.562
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.