STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB02802.1Hypothetical protein. (155 aa)    
Predicted Functional Partners:
SEA51356.1
Propane monooxygenase small subunit.
   
 0.936
SDZ99992.1
Uncharacterized membrane protein.
 
    0.825
SEA51388.1
Propane monooxygenase reductase subunit.
  
 
  0.750
SEA34839.1
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase.
 
 
  0.729
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.724
SEA81089.1
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
   
  0.659
SEA85253.1
Hypothetical protein.
    
 0.646
SEB05033.1
Hypothetical protein.
    
 0.646
SEA78052.1
Ferredoxin-NADP reductase.
    
 0.635
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
    0.469
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.