POLR2H protein (Gallus gallus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

POLR2H

Uncharacterized protein. (172 aa)

Predicted Functional Partners:

POLR2C

0.999

POLR2D

0.999

POLR2E

0.999

POLR3F

0.999

POLR2F

0.999

POLR2L

0.999

POLR2K

0.999

POLR2I

0.999

POLR1C

0.999

POLR1D

0.999

Your Current Organism:

Gallus gallus

NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
POLR1C	POLR1D	ENSGALP00000061621	ENSGALP00000064387	RPOLD domain-containing protein.	RNA polymerase I and III subunit D.	0.999
POLR1C	POLR2C	ENSGALP00000061621	ENSGALP00000001766	RPOLD domain-containing protein.	RPOLD domain-containing protein.	0.485
POLR1C	POLR2D	ENSGALP00000061621	ENSGALP00000003195	RPOLD domain-containing protein.	RPOL4c domain-containing protein.	0.947
POLR1C	POLR2E	ENSGALP00000061621	ENSGALP00000004071	RPOLD domain-containing protein.	RNA polymerase II subunit E.	0.999
POLR1C	POLR2F	ENSGALP00000061621	ENSGALP00000020057	RPOLD domain-containing protein.	RNA polymerase common subunit RPB6.	0.999
POLR1C	POLR2H	ENSGALP00000061621	ENSGALP00000066349	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
POLR1C	POLR2I	ENSGALP00000061621	ENSGALP00000051183	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.805
POLR1C	POLR2K	ENSGALP00000061621	ENSGALP00000048614	RPOLD domain-containing protein.	RNA polymerase II subunit K.	0.998
POLR1C	POLR2L	ENSGALP00000061621	ENSGALP00000038267	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
POLR1C	POLR3F	ENSGALP00000061621	ENSGALP00000014222	RPOLD domain-containing protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.998
POLR1D	POLR1C	ENSGALP00000064387	ENSGALP00000061621	RNA polymerase I and III subunit D.	RPOLD domain-containing protein.	0.999
POLR1D	POLR2C	ENSGALP00000064387	ENSGALP00000001766	RNA polymerase I and III subunit D.	RPOLD domain-containing protein.	0.995
POLR1D	POLR2D	ENSGALP00000064387	ENSGALP00000003195	RNA polymerase I and III subunit D.	RPOL4c domain-containing protein.	0.697
POLR1D	POLR2E	ENSGALP00000064387	ENSGALP00000004071	RNA polymerase I and III subunit D.	RNA polymerase II subunit E.	0.999
POLR1D	POLR2F	ENSGALP00000064387	ENSGALP00000020057	RNA polymerase I and III subunit D.	RNA polymerase common subunit RPB6.	0.998
POLR1D	POLR2H	ENSGALP00000064387	ENSGALP00000066349	RNA polymerase I and III subunit D.	Uncharacterized protein.	0.999
POLR1D	POLR2I	ENSGALP00000064387	ENSGALP00000051183	RNA polymerase I and III subunit D.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.866
POLR1D	POLR2K	ENSGALP00000064387	ENSGALP00000048614	RNA polymerase I and III subunit D.	RNA polymerase II subunit K.	0.997
POLR1D	POLR2L	ENSGALP00000064387	ENSGALP00000038267	RNA polymerase I and III subunit D.	Uncharacterized protein.	0.999
POLR1D	POLR3F	ENSGALP00000064387	ENSGALP00000014222	RNA polymerase I and III subunit D.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.998