STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnW2-aminoethylphosphonate:pyruvate aminotransferase; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily. (368 aa)    
Predicted Functional Partners:
phnX
Phosphonoacetaldehyde hydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.
  
 0.999
ADT88367.1
Aminotransferase, class III; COG0160; COG4992; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.886
ADT88369.1
ABC transporter, periplasmic substrate-binding protein; COG1840.
 
  
 0.850
ADT88371.1
ABC transporter, permease protein; COG1176; COG1177.
 
     0.803
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.761
purD
Phosphoribosylamine--glycine ligase; COG0151; Belongs to the GARS family.
  
    0.736
lldD
L-lactate dehydrogenase; Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain; Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.
  
 0.580
prpB
2-methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
  
  
 0.551
ADT86889.1
Aminotransferase, class III/decarboxylase, group II; COG0160; COG1104; COG4992; COG0076.
  
 
 0.526
ADT88370.1
ABC-type spermidine/putrescine transport system ATPase component; COG3842; Belongs to the ABC transporter superfamily.
 
     0.496
Your Current Organism:
Vibrio furnissii
NCBI taxonomy Id: 903510
Other names: V. furnissii NCTC 11218, Vibrio furnissii NCTC 11218, Vibrio furnissii str. NCTC 11218, Vibrio furnissii strain NCTC 11218
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