L1IRN7_GUITC protein (Guillardia theta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L1IRN7_GUITC

Uncharacterized protein. (543 aa)

Predicted Functional Partners:

RPL11e

0.881

RPL5e

0.877

RPL23Ae

0.867

RPL26e

0.865

L1IZB6_GUITC

0.863

RPL9e

0.858

RPL17e

0.856

RPL32e

0.847

RPS15Ae

0.842

RPS3e

0.842

Your Current Organism:

Guillardia theta

NCBI taxonomy Id: 905079
Other names: G. theta CCMP2712, Guillardia theta CCMP2712

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L1IRN7_GUITC	L1IZB6_GUITC	L1IRN7	L1IZB6	Uncharacterized protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.863
L1IRN7_GUITC	RPL11e	L1IRN7	L1JG94	Uncharacterized protein.	Large subunit ribosomal protein L11e, cytoplasmic; Belongs to the universal ribosomal protein uL5 family.	0.881
L1IRN7_GUITC	RPL17e	L1IRN7	L1J568	Uncharacterized protein.	Large subunit ribosomal protein L17e, cytoplasmic; Belongs to the universal ribosomal protein uL22 family.	0.856
L1IRN7_GUITC	RPL23Ae	L1IRN7	L1IGD0	Uncharacterized protein.	Large subunit ribosomal protein L23Ae, cytoplasmic; Belongs to the universal ribosomal protein uL23 family.	0.867
L1IRN7_GUITC	RPL26e	L1IRN7	L1I4Y1	Uncharacterized protein.	Large subunit ribosomal protein L26e, cytoplasmic.	0.865
L1IRN7_GUITC	RPL32e	L1IRN7	L1JSF7	Uncharacterized protein.	Large subunit ribosomal protein L32e, cytoplasmic.	0.847
L1IRN7_GUITC	RPL5e	L1IRN7	L1I3R0	Uncharacterized protein.	Large subunit ribosomal protein L5e, cytoplasmic.	0.877
L1IRN7_GUITC	RPL9e	L1IRN7	L1JLH5	Uncharacterized protein.	Large subunit ribosomal protein L9e, cytoplasmic.	0.858
L1IRN7_GUITC	RPS15Ae	L1IRN7	L1JCY6	Uncharacterized protein.	Small subunit ribosomal protein S15Ae, cytoplasmic; Belongs to the universal ribosomal protein uS8 family.	0.842
L1IRN7_GUITC	RPS3e	L1IRN7	L1JIC8	Uncharacterized protein.	Small subunit ribosomal protein S3e, cytoplasmic.	0.842
L1IZB6_GUITC	L1IRN7_GUITC	L1IZB6	L1IRN7	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.863
L1IZB6_GUITC	RPL11e	L1IZB6	L1JG94	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Large subunit ribosomal protein L11e, cytoplasmic; Belongs to the universal ribosomal protein uL5 family.	0.999
L1IZB6_GUITC	RPL17e	L1IZB6	L1J568	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Large subunit ribosomal protein L17e, cytoplasmic; Belongs to the universal ribosomal protein uL22 family.	0.999
L1IZB6_GUITC	RPL23Ae	L1IZB6	L1IGD0	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Large subunit ribosomal protein L23Ae, cytoplasmic; Belongs to the universal ribosomal protein uL23 family.	0.999
L1IZB6_GUITC	RPL26e	L1IZB6	L1I4Y1	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Large subunit ribosomal protein L26e, cytoplasmic.	0.999
L1IZB6_GUITC	RPL32e	L1IZB6	L1JSF7	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Large subunit ribosomal protein L32e, cytoplasmic.	0.999
L1IZB6_GUITC	RPL5e	L1IZB6	L1I3R0	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Large subunit ribosomal protein L5e, cytoplasmic.	0.999
L1IZB6_GUITC	RPL9e	L1IZB6	L1JLH5	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Large subunit ribosomal protein L9e, cytoplasmic.	0.999
L1IZB6_GUITC	RPS15Ae	L1IZB6	L1JCY6	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Small subunit ribosomal protein S15Ae, cytoplasmic; Belongs to the universal ribosomal protein uS8 family.	0.999
L1IZB6_GUITC	RPS3e	L1IZB6	L1JIC8	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Small subunit ribosomal protein S3e, cytoplasmic.	0.999