L1K3S4_GUITC protein (Guillardia theta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L1K3S4_GUITC

PPR_long domain-containing protein. (363 aa)

Predicted Functional Partners:

L1IM25_GUITC

0.663

L1JGK8_GUITC

0.624

L1JQ05_GUITC

0.602

L1JZT8_GUITC

0.602

L1IPM5_GUITC

0.583

L1IDY3_GUITC

0.522

L1JKN2_GUITC

0.522

L1K4J6_GUITC

0.518

PCNA

0.484

L1JQW5_GUITC

0.457

Your Current Organism:

Guillardia theta

NCBI taxonomy Id: 905079
Other names: G. theta CCMP2712, Guillardia theta CCMP2712

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L1IDY3_GUITC	L1IM25_GUITC	L1IDY3	L1IM25	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Uncharacterized protein.	0.963
L1IDY3_GUITC	L1IPM5_GUITC	L1IDY3	L1IPM5	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Spindle pole body component.	0.985
L1IDY3_GUITC	L1JGK8_GUITC	L1IDY3	L1JGK8	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Spindle pole body component.	0.970
L1IDY3_GUITC	L1JQ05_GUITC	L1IDY3	L1JQ05	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Spindle pole body component.	0.956
L1IDY3_GUITC	L1JZT8_GUITC	L1IDY3	L1JZT8	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Uncharacterized protein.	0.956
L1IDY3_GUITC	L1K3S4_GUITC	L1IDY3	L1K3S4	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	PPR_long domain-containing protein.	0.522
L1IM25_GUITC	L1IDY3_GUITC	L1IM25	L1IDY3	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.963
L1IM25_GUITC	L1IPM5_GUITC	L1IM25	L1IPM5	Uncharacterized protein.	Spindle pole body component.	0.996
L1IM25_GUITC	L1JGK8_GUITC	L1IM25	L1JGK8	Uncharacterized protein.	Spindle pole body component.	0.999
L1IM25_GUITC	L1JKN2_GUITC	L1IM25	L1JKN2	Uncharacterized protein.	Tubulin domain-containing protein; Belongs to the tubulin family.	0.963
L1IM25_GUITC	L1JQ05_GUITC	L1IM25	L1JQ05	Uncharacterized protein.	Spindle pole body component.	0.973
L1IM25_GUITC	L1JZT8_GUITC	L1IM25	L1JZT8	Uncharacterized protein.	Uncharacterized protein.	0.973
L1IM25_GUITC	L1K3S4_GUITC	L1IM25	L1K3S4	Uncharacterized protein.	PPR_long domain-containing protein.	0.663
L1IPM5_GUITC	L1IDY3_GUITC	L1IPM5	L1IDY3	Spindle pole body component.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.985
L1IPM5_GUITC	L1IM25_GUITC	L1IPM5	L1IM25	Spindle pole body component.	Uncharacterized protein.	0.996
L1IPM5_GUITC	L1JGK8_GUITC	L1IPM5	L1JGK8	Spindle pole body component.	Spindle pole body component.	0.996
L1IPM5_GUITC	L1JKN2_GUITC	L1IPM5	L1JKN2	Spindle pole body component.	Tubulin domain-containing protein; Belongs to the tubulin family.	0.985
L1IPM5_GUITC	L1JQ05_GUITC	L1IPM5	L1JQ05	Spindle pole body component.	Spindle pole body component.	0.988
L1IPM5_GUITC	L1JZT8_GUITC	L1IPM5	L1JZT8	Spindle pole body component.	Uncharacterized protein.	0.986
L1IPM5_GUITC	L1K3S4_GUITC	L1IPM5	L1K3S4	Spindle pole body component.	PPR_long domain-containing protein.	0.583