STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCL1-2Endoribonuclease Dicer like 1; Belongs to the helicase family. Dicer subfamily. (1928 aa)    
Predicted Functional Partners:
AGO7
Protein argonaute 7; Belongs to the argonaute family.
   
 0.839
AGO7-2
Protein argonaute 7; Belongs to the argonaute family.
   
 0.839
DCL-2
Protein DCL, chloroplastic.
      
 0.810
AGO10-2
Protein argonaute 10; Belongs to the argonaute family.
   
 0.808
HEN1
Small RNA 2'-O-methyltransferase.
   
 
 0.797
AGO10
Protein argonaute 10; Belongs to the argonaute family.
   
 0.791
MEL1
Protein argonaute MEL1.
   
 0.780
NRPD1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.743
RDR2
RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.
    
 
 0.734
NRPE1
DNA-directed RNA polymerase E subunit 1.
   
 
 0.733
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.